PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676790678
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 271aa    MW: 32036.6 Da    PI: 9.7054
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676790678genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35201112102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y+i++d+++++++sws+++nsf v+++++fa  +Lp yFkh+nf+SFvRQLn+YgFkkv++e+         weF++++F +gk++ll++i+
     676790678  20 FITKTYNIVDDSRTNNIVSWSRDNNSFTVWEPDTFALICLPLYFKHNNFSSFVRQLNTYGFKKVDTER---------WEFANEYFLRGKRHLLKNIR 107
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     676790678 108 RRKT 111
                   **86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.76E-3416109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5216109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDYNLPTPLE GLKKTGPTPF ITKTYNIVDD SRTNNIVSWS RDNNSFTVWE PDTFALICLP  60
LYFKHNNFSS FVRQLNTYGF KKVDTERWEF ANEYFLRGKR HLLKNIRRRK TPSQAQSLEN  120
DRFGLEQEIQ GMRRDKAALV VELVRLKRKQ ESVKTYLRLM EEKLKTTEKK QEMAMDFLLN  180
KIKKPDFLQS LRKRKQQGIE NLEQRHEMFS GHGVEDHETF VKAEPEEYSV DIGDQFGGVF  240
GYGDEVQIAS MEGQRGLKWR WIVKDFGRFL C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-221111117131Heat shock factor protein 1
5d5v_B4e-221111117131Heat shock factor protein 1
5d5v_D4e-221111117131Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00541DAPTransfer from AT5G43840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403174.11e-153hypothetical protein EUTSA_v10003365mg
SwissprotQ1PDN31e-138HFA6A_ARATH; Heat stress transcription factor A-6a
TrEMBLV4LQ791e-153V4LQ79_EUTSA; Uncharacterized protein
STRINGBra035993.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156831416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43840.11e-128heat shock transcription factor A6A